Transcript: UGDH-AS1:2

Basic information

LNCipedia transcript ID: UGDH-AS1:2 
LNCipedia gene ID: UGDH-AS1
RefSeq ID: NR_047679
Location (hg38): chr4:39527839-39594707
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2967 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_047679; NR_047679.1
Alternative gene names: ; UGDH-AS1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.4182 non-coding 
CPAT coding probability 99.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
UGDH-AS1:2 no no no no

Available literature

  1. Qu (2018), Comprehensive evaluation of differential lncRNA and gene expression in patients with intervertebral disc degeneration., Mol Med Rep
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIAS-2:3
4.0 UGDH-AS1:2
4.1 UGDH-AS1:2
5.0 UGDH-AS1:2
5.1 UGDH-AS1:2
5.2 UGDH-AS1:2