Transcript: UGDH-AS1:3

Basic information

LNCipedia transcript ID: UGDH-AS1:3 
HGNC Gene Symbol: UGDH-AS1    
HGNC Full Gene Name: UGDH antisense RNA 1
Ensembl Gene ID: ENSG00000249348
Ensembl Transcript ID: ENST00000504032
Location (hg38): chr4:39528019-39594707
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2787 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504032.1; UGDH-AS1-001; OTTHUMT00000361033.1
Alternative gene names: ENSG00000249348.1; UGDH-AS1; OTTHUMG00000160540.1;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.4182 non-coding 
CPAT coding probability 99.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
UGDH-AS1:3 no no no no

Available literature

  1. Qu (2018), Comprehensive evaluation of differential lncRNA and gene expression in patients with intervertebral disc degeneration., Mol Med Rep
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIAS-2:1
4.0 UGDH-AS1:3
4.1 UGDH-AS1:3
5.0 UGDH-AS1:3
5.1 UGDH-AS1:3
5.2 UGDH-AS1:3