Transcript: USP3-AS1:13

Basic information

LNCipedia transcript ID: USP3-AS1:13 
HGNC Gene Symbol: USP3-AS1    
HGNC Full Gene Name: USP3 antisense RNA 1
Ensembl Gene ID: ENSG00000259248
Ensembl Transcript ID: ENST00000559861
Location (hg38): chr15:63556642-63594704
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 620 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559861.1; RP11-265M18.2-004; OTTHUMT00000418515.1; NONHSAT046620
Alternative gene names: ENSG00000259248.1; RP11-265M18.2; OTTHUMG00000172432.1; USP3-AS1; ENSG00000259248.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -339.8048 non-coding 
CPAT coding probability 13.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
USP3-AS1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HERC1-1:8
4.0 USP3-AS1:13
4.1 USP3-AS1:13
5.0 USP3-AS1:13
5.1 USP3-AS1:13
5.2 USP3-AS1:13