Transcript: USP30-AS1:3

Basic information

LNCipedia transcript ID: USP30-AS1:3 
HGNC Gene Symbol: USP30-AS1    
HGNC Full Gene Name: USP30 antisense RNA 1
Ensembl Gene ID: ENSG00000256262
Ensembl Transcript ID: ENST00000478808
Location (hg38): chr12:109052350-109053952
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 656 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000478808.2; RP11-117B7.1-001; OTTHUMT00000403058.1
Alternative gene names: ENSG00000256262.1; RP11-117B7.1; OTTHUMG00000169245.1; USP30-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.1513 non-coding 
CPAT coding probability 24.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
USP30-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SVOP-2:1
4.0 USP30-AS1:3
4.1 USP30-AS1:3
5.0 USP30-AS1:3
5.1 USP30-AS1:3
5.2 USP30-AS1:3