Transcript: VAV3-AS1:14

Basic information

LNCipedia transcript ID: VAV3-AS1:14 
LNCipedia gene ID: VAV3-AS1
Ensembl Gene ID: ENSG00000226822
Ensembl Transcript ID: ENST00000635340
Location (hg38): chr1:108050381-108072022
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 894 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635340.1
Alternative gene names: ENSG00000226822.2; RP11-356N1.2; ; AL390036.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -179.598 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VAV3-AS1:14 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NBPF6-3:5
4.1 VAV3-AS1:14
5.0 VAV3-AS1:14
5.1 VAV3-AS1:14
5.2 VAV3-AS1:14