Transcript: VAV3-AS1:18

Basic information

LNCipedia transcript ID: VAV3-AS1:18 
LNCipedia gene ID: VAV3-AS1
Location (hg38): chr1:108071482-108074519
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000419428; ENST00000419428.1; RP11-356N1.2-001; OTTHUMT00000030278.1; NONHSAT004974; FPKM1_group_1172_transcript_1
Alternative gene names: ENSG00000226822; RP11-356N1.2; ENSG00000226822.1; OTTHUMG00000011012.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.4896 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VAV3-AS1:18 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF6-1:1
3.1 lnc-NBPF6-3:1
4.0 lnc-NBPF6-3:1
4.1 VAV3-AS1:18
5.0 VAV3-AS1:18
5.1 VAV3-AS1:18
5.2 VAV3-AS1:18