Transcript: VAV3-AS1:19

Basic information

LNCipedia transcript ID: VAV3-AS1:19 
LNCipedia gene ID: VAV3-AS1
Ensembl Gene ID: ENSG00000226822
Ensembl Transcript ID: ENST00000451023
Location (hg38): chr1:108072371-108074493
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451023; ENST00000451023.1; RP11-356N1.2-002; OTTHUMT00000030279.1; NONHSAT004975
Alternative gene names: ENSG00000226822; RP11-356N1.2; ENSG00000226822.1; OTTHUMG00000011012.1; ENSG00000226822.2; ; AL390036.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.7323 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VAV3-AS1:19 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF6-1:2
3.1 lnc-NBPF6-3:2
4.0 lnc-NBPF6-3:2
4.1 VAV3-AS1:19
5.0 VAV3-AS1:19
5.1 VAV3-AS1:19
5.2 VAV3-AS1:19