Transcript: VIM-AS1:13

Basic information

LNCipedia transcript ID: VIM-AS1:13 
LNCipedia gene ID: VIM-AS1
Location (hg38): chr10:17171908-17202054
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 711 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT011607
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 736.6844 coding 
CPAT coding probability 41.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
VIM-AS1:13 yes no no no

Available literature

  1. Rezanejad Bardaji (2018), Long noncoding RNA VIM-AS1 promotes colorectal cancer progression and metastasis by inducing EMT., Eur. J. Cell Biol.
  2. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CUBN-2:1
4.0 lnc-TRDMT1-2:2
4.1 VIM-AS1:13
5.0 VIM-AS1:13
5.1 VIM-AS1:13
5.2 VIM-AS1:13