Transcript: VIM-AS1:5

Basic information

LNCipedia transcript ID: VIM-AS1:5 
HGNC Gene Symbol: VIM-AS1    
HGNC Full Gene Name: VIM antisense RNA 1
Ensembl Gene ID: ENSG00000229124
Ensembl Transcript ID: ENST00000437232
RefSeq ID: NR_108060
Location (hg38): chr10:17214239-17226898
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1351 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000437232.1; RP11-124N14.4-001; OTTHUMT00000047014.1; NONHSAT011608; NR_108060; ENST00000437232.5; NR_108060.1
Alternative gene names: ENSG00000229124.1; RP11-124N14.4; OTTHUMG00000017743.1; ENSG00000229124.2; VIM-AS1; ENSG00000229124.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.5729 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VIM-AS1:5 no no no no

Available literature

  1. Rezanejad Bardaji (2018), Long noncoding RNA VIM-AS1 promotes colorectal cancer progression and metastasis by inducing EMT., Eur. J. Cell Biol.
  2. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRDMT1-1:1
4.0 VIM-AS1:5
4.1 VIM-AS1:5
5.0 VIM-AS1:5
5.1 VIM-AS1:5
5.2 VIM-AS1:5