Transcript: VLDLR-AS1:1

Basic information

LNCipedia transcript ID: VLDLR-AS1:1 
HGNC Gene Symbol: VLDLR-AS1    
HGNC Full Gene Name: VLDLR antisense RNA 1
Ensembl Gene ID: ENSG00000236404
Ensembl Transcript ID: ENST00000599229
Location (hg38): chr9:2535657-2643359
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1346 bp
Exons: 8
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000599229.2
Alternative gene names: ENSG00000236404.8; VLDLR-AS1; ; lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 894.7003 coding 
CPAT coding probability 73.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
VLDLR-AS1:1 yes no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 VLDLR-AS1:1
4.1 VLDLR-AS1:1
5.0 VLDLR-AS1:1
5.1 VLDLR-AS1:1
5.2 VLDLR-AS1:1