Transcript: VLDLR-AS1:16

Basic information

LNCipedia transcript ID: VLDLR-AS1:16 
LNCipedia gene ID: VLDLR-AS1
Location (hg38): chr9:2535652-2622387
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 901 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236404.4|ENST00000453601.1
Alternative gene names: lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -137.1827 non-coding 
CPAT coding probability 5.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VLDLR-AS1:16 yes no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 VLDLR-AS1:16
5.0 VLDLR-AS1:16
5.1 VLDLR-AS1:16
5.2 VLDLR-AS1:16