Transcript: VLDLR-AS1:2

Basic information

LNCipedia transcript ID: VLDLR-AS1:2 
LNCipedia gene ID: VLDLR-AS1
Location (hg38): chr9:2622090-2641395
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT130003; ENST00000599229.1
Alternative gene names: ENSG00000236404.4; RP11-125B21.2; ; lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1148.5017 non-coding 
CPAT coding probability 63.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
VLDLR-AS1:2 yes no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0020-1:5
4.0 VLDLR-AS1:2
4.1 VLDLR-AS1:2
5.0 VLDLR-AS1:2
5.1 VLDLR-AS1:2
5.2 VLDLR-AS1:2