Transcript: VLDLR-AS1:20

Basic information

LNCipedia transcript ID: VLDLR-AS1:20 
LNCipedia gene ID: VLDLR-AS1
Location (hg38): chr9:2496206-2621415
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1528 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236404.4|FTMT23300045951.1
Alternative gene names: lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -56.9919 non-coding 
CPAT coding probability 8.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VLDLR-AS1:20 no no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 VLDLR-AS1:20
5.0 VLDLR-AS1:20
5.1 VLDLR-AS1:20
5.2 VLDLR-AS1:20