Transcript: VLDLR-AS1:4

Basic information

LNCipedia transcript ID: VLDLR-AS1:4 
LNCipedia gene ID: VLDLR-AS1
Location (hg38): chr9:2535655-2622373
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 884 bp
Exons: 4
Sources: Refseq - Dec 2014
Alternative transcript names: NR_015375
Alternative gene names: ; lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.1827 non-coding 
CPAT coding probability 10.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VLDLR-AS1:4 yes no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0020-1:6
4.0 VLDLR-AS1:4
4.1 VLDLR-AS1:4
5.0 VLDLR-AS1:4
5.1 VLDLR-AS1:4
5.2 VLDLR-AS1:4