Transcript: VLDLR-AS1:6

Basic information

LNCipedia transcript ID: VLDLR-AS1:6 
LNCipedia gene ID: VLDLR-AS1
Location (hg38): chr9:2422702-2621413
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3108 bp
Exons: 11
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000416826; ENST00000416826.1; RP11-125B21.2-001; OTTHUMT00000051524.1; NONHSAT129993
Alternative gene names: ENSG00000236404; RP11-125B21.2; ENSG00000236404.2; OTTHUMG00000019448.1; ; lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.9919 non-coding 
CPAT coding probability 14.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VLDLR-AS1:6 no no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0020-1:2
3.1 lnc-KIAA0020-1:2
4.0 VLDLR-AS1:6
4.1 VLDLR-AS1:6
5.0 VLDLR-AS1:6
5.1 VLDLR-AS1:6
5.2 VLDLR-AS1:6