Transcript: WAC-AS1:3

Basic information

LNCipedia transcript ID: WAC-AS1:3 
HGNC Gene Symbol: WAC-AS1    
HGNC Full Gene Name: WAC antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000254635
Ensembl Transcript ID: ENST00000527986
Location (hg38): chr10:28522652-28532743
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2323 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527986.1; RP11-164A7.1-001; OTTHUMT00000388577.1; NONHSAT011932; ENST00000527986.5
Alternative gene names: ENSG00000254635.1; RP11-164A7.1; OTTHUMG00000166235.1; WAC-AS1; ENSG00000254635.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.2107 non-coding 
CPAT coding probability 25.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WAC-AS1:3 yes no no no

Available literature

  1. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPP7-3:1
4.0 WAC-AS1:3
4.1 WAC-AS1:3
5.0 WAC-AS1:3
5.1 WAC-AS1:3
5.2 WAC-AS1:3