Transcript: WAC-AS1:4

Basic information

LNCipedia transcript ID: WAC-AS1:4 
LNCipedia gene ID: WAC-AS1
Location (hg38): chr10:28524219-28532664
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 616 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT011935
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.9991 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WAC-AS1:4 yes no no no

Available literature

  1. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPP7-3:4
4.0 WAC-AS1:4
4.1 WAC-AS1:4
5.0 WAC-AS1:4
5.1 WAC-AS1:4
5.2 WAC-AS1:4