Transcript: WAC-AS1:5

Basic information

LNCipedia transcript ID: WAC-AS1:5 
HGNC Gene Symbol: WAC-AS1    
HGNC Full Gene Name: WAC antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000254635
Ensembl Transcript ID: ENST00000528337
Location (hg38): chr10:28522685-28532354
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2608 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528337.1; RP11-164A7.1-002; OTTHUMT00000388578.1
Alternative gene names: ENSG00000254635.1; RP11-164A7.1; OTTHUMG00000166235.1; WAC-AS1; ENSG00000254635.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.2107 non-coding 
CPAT coding probability 24.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WAC-AS1:5 no no no no

Available literature

  1. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPP7-3:2
4.0 WAC-AS1:5
4.1 WAC-AS1:5
5.0 WAC-AS1:5
5.1 WAC-AS1:5
5.2 WAC-AS1:5