Transcript: WAC-AS1:6

Basic information

LNCipedia transcript ID: WAC-AS1:6 
LNCipedia gene ID: WAC-AS1
RefSeq ID: NR_033805
Location (hg38): chr10:28519917-28532354
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 5376 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033805; NR_033805.1
Alternative gene names: ; WAC-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.2107 non-coding 
CPAT coding probability 22.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WAC-AS1:6 no no no no

Available literature

  1. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPP7-3:5
4.0 WAC-AS1:6
4.1 WAC-AS1:6
5.0 WAC-AS1:6
5.1 WAC-AS1:6
5.2 WAC-AS1:6