Transcript: WAC-AS1:8

Basic information

LNCipedia transcript ID: WAC-AS1:8 
LNCipedia gene ID: WAC-AS1
Location (hg38): chr10:28521058-28522171
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1114 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA189:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.5486 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WAC-AS1:8 no no no no

Available literature

  1. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 WAC-AS1:8
4.1 WAC-AS1:8
5.0 WAC-AS1:8
5.1 WAC-AS1:8
5.2 WAC-AS1:8