Transcript: WDFY3-AS2:14

Basic information

LNCipedia transcript ID: WDFY3-AS2:14 
LNCipedia gene ID: WDFY3-AS2
Location (hg38): chr4:85000687-85008748
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2952 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT097259; FPKM1_group_23687_transcript_1
Alternative gene names: FBI4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.3329 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WDFY3-AS2:14 no no no no

Available literature

  1. Kehrer-Sawatzki (2005), Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes)., Hum. Mutat.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDS1-2:10
4.0 WDFY3-AS2:14
4.1 WDFY3-AS2:14
5.0 WDFY3-AS2:14
5.1 WDFY3-AS2:14
5.2 WDFY3-AS2:14