Transcript: WDFY3-AS2:6

Basic information

LNCipedia transcript ID: WDFY3-AS2:6 
HGNC Gene Symbol: WDFY3-AS2    
HGNC Full Gene Name: WDFY3 antisense RNA 2
Ensembl Gene ID: ENSG00000180769
Ensembl Transcript ID: ENST00000318186
Location (hg38): chr4:84966793-85007015
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1594 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000318186; ENST00000318186.3; WDFY3-AS2-002; OTTHUMT00000280507.1; NONHSAT097254; ENST00000318186.6
Alternative gene names: ENSG00000180769; NCRNA00247; ENSG00000180769.4; WDFY3-AS2; OTTHUMG00000141281.2; ENSG00000180769.8; FBI4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.5973 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WDFY3-AS2:6 no no no no

Available literature

  1. Kehrer-Sawatzki (2005), Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes)., Hum. Mutat.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDS1-1:2
3.1 lnc-CDS1-2:2
4.0 WDFY3-AS2:6
4.1 WDFY3-AS2:6
5.0 WDFY3-AS2:6
5.1 WDFY3-AS2:6
5.2 WDFY3-AS2:6