Transcript: WWTR1-IT1:1

Basic information

LNCipedia transcript ID: WWTR1-IT1:1 
HGNC Gene Symbol: WWTR1-IT1    
HGNC Full Gene Name: WWTR1 intronic transcript 1
Ensembl Gene ID: ENSG00000241985
Ensembl Transcript ID: ENST00000463167
Location (hg38): chr3:149648997-149650184
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 451 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000463167.1; WWTR1-IT1-001; OTTHUMT00000356532.1; NONHSAT092652
Alternative gene names: ENSG00000241985.1; WWTR1-IT1; OTTHUMG00000159620.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -340.0765 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WWTR1-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COMMD2-1:1
4.0 WWTR1-IT1:1
4.1 WWTR1-IT1:1
5.0 WWTR1-IT1:1
5.1 WWTR1-IT1:1
5.2 WWTR1-IT1:1