Transcript: XACT:1

Basic information

LNCipedia transcript ID: XACT:1 
HGNC Gene Symbol: XACT    
HGNC Full Gene Name: X active specific transcript
Ensembl Gene ID: ENSG00000241743
Ensembl Transcript ID: ENST00000468762
Location (hg38): chrX:113616300-113938218
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT138218; ENST00000468762.2
Alternative gene names: ENSG00000241743.2; RP5-964N17.1; XACT;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0879 non-coding 
CPAT coding probability 5.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XACT:1 no no no no

Available literature

  1. Vallot (2015), Erosion of X Chromosome Inactivation in Human Pluripotent Cells Initiates with XACT Coating and Depends on a Specific Heterochromatin Landscape., Cell Stem Cell
  2. Vallot (2013), XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMOT-1:2
4.0 XACT:1
4.1 XACT:1
5.0 XACT:1
5.1 XACT:1
5.2 XACT:1