Transcript: XACT:2

Basic information

LNCipedia transcript ID: XACT:2 
LNCipedia gene ID: XACT
RefSeq ID: NR_131204
Location (hg38): chrX:113616300-113618153
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 471 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017082; ENST00000468762; ENST00000468762.1; RP5-964N17.1-001; OTTHUMT00000057955.2; NONHSAT138219; NR_131204.1
Alternative gene names: XLOC_008209; linc-AMOT-1; ENSG00000241743; RP5-964N17.1; ENSG00000241743.1; OTTHUMG00000022220.2; ; XACT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0879 non-coding 
CPAT coding probability 5.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XACT:2 no no no no

Available literature

  1. Vallot (2015), Erosion of X Chromosome Inactivation in Human Pluripotent Cells Initiates with XACT Coating and Depends on a Specific Heterochromatin Landscape., Cell Stem Cell
  2. Vallot (2013), XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMOT-1:1
3.1 lnc-AMOT-1:1
4.0 XACT:2
4.1 XACT:2
5.0 XACT:2
5.1 XACT:2
5.2 XACT:2