Transcript: XIST:39

Basic information

LNCipedia transcript ID: XIST:39 
LNCipedia gene ID: XIST
Location (hg38): chrX:73827286-73850647
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9486 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000229807.5|HBMT00001549551.1
Alternative gene names: NCRNA00001; DXS1089; swd66; LINC00001


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.5471 non-coding 
CPAT coding probability 4.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XIST:39 no no no no

Available literature

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  77. Huang (2014), Urinary Xist is a potential biomarker for membranous nephropathy., Biochem. Biophys. Res. Commun.
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LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 XIST:39
5.0 XIST:39
5.1 XIST:39
5.2 XIST:39