Transcript: XIST:9

Basic information

LNCipedia transcript ID: XIST:9 
LNCipedia gene ID: XIST
Location (hg38): chrX:73820694-73850627
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2637 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT137550
Alternative gene names: NCRNA00001; DXS1089; swd66; LINC00001

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.6118 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XIST:9 no no no no

Available literature

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  77. Huang (2014), Urinary Xist is a potential biomarker for membranous nephropathy., Biochem. Biophys. Res. Commun.
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  203. Chaumeil (2011), Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals., PLoS ONE
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  206. Duszczyk (2011), The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization., RNA
  207. Hasegawa (2011), Revisiting the function of nuclear scaffold/matrix binding proteins in X chromosome inactivation., RNA Biol
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  209. Jeon (2011), YY1 tethers Xist RNA to the inactive X nucleation center., Cell
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LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAP1L2-1:19
4.0 XIST:9
4.1 XIST:9
5.0 XIST:9
5.1 XIST:9
5.2 XIST:9