Transcript: XXYLT1-AS1:1

Basic information

LNCipedia transcript ID: XXYLT1-AS1:1 
HGNC Gene Symbol: XXYLT1-AS1    
HGNC Full Gene Name: XXYLT1 antisense RNA 1
Ensembl Gene ID: ENSG00000233303
Ensembl Transcript ID: ENST00000458531
RefSeq ID: NR_104188
Location (hg38): chr3:195094588-195096057
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 431 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000458531.1; XXYLT1-AS1-001; OTTHUMT00000342305.1; NONHSAT094140; NR_104188; NR_104188.1
Alternative gene names: ENSG00000233303.1; XXYLT1-AS1; OTTHUMG00000155917.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -733.8087 non-coding 
CPAT coding probability 5.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XXYLT1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM43A-10:1
4.0 XXYLT1-AS1:1
4.1 XXYLT1-AS1:1
5.0 XXYLT1-AS1:1
5.1 XXYLT1-AS1:1
5.2 XXYLT1-AS1:1