Transcript: ZBED5-AS1:9

Basic information

LNCipedia transcript ID: ZBED5-AS1:9 
LNCipedia gene ID: ZBED5-AS1
Location (hg38): chr11:10858275-10879262
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 954 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019232; NONHSAT018004
Alternative gene names: XLOC_009065; linc-USP47-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.6377 non-coding 
CPAT coding probability 9.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZBED5-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTR9-3:5
3.1 lnc-CTR9-3:5
4.0 ZBED5-AS1:9
4.1 ZBED5-AS1:9
5.0 ZBED5-AS1:9
5.1 ZBED5-AS1:9
5.2 ZBED5-AS1:9