Transcript: ZFPM2-AS1:6

Basic information

LNCipedia transcript ID: ZFPM2-AS1:6 
LNCipedia gene ID: ZFPM2-AS1
Location (hg38): chr8:105784991-106060477
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 801 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000524045.1; RP11-152P17.2-001; OTTHUMT00000380624.1; NONHSAT128236
Alternative gene names: ENSG00000251003.2; RP11-152P17.2; OTTHUMG00000164861.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.1835 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 1 coding 
seqAAMNPPAEIPVHILSTKNLNLKEFWCW
orfFrame6.22881869
covF1Prop0.130434783

In stringent set: no

Locus conservation

Locus conservation?
ZFPM2-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-778D12.2.1-4:3
4.0 ZFPM2-AS1:6
4.1 ZFPM2-AS1:6
5.0 ZFPM2-AS1:6
5.1 ZFPM2-AS1:6
5.2 ZFPM2-AS1:6