Transcript: ZIM2-AS1:6

Basic information

LNCipedia transcript ID: ZIM2-AS1:6 
HGNC Gene Symbol: ZIM2-AS1    
HGNC Full Gene Name: ZIM2 antisense RNA 1
Ensembl Gene ID: ENSG00000269793
Ensembl Transcript ID: ENST00000597946
Location (hg38): chr19:56765373-56798379
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 429 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068191; ENST00000597946.1
Alternative gene names: ENSG00000269793.1; AC006115.3; ENSG00000269793.5; ZIM2-AS1; ZIM2as; ENSG00000269793.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1052 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZIM2-AS1:6 no no no no

Available literature

  1. Huang (2009), Identification of an antisense transcript to ZIM2 in the primate lineage., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF71-6:5
4.0 ZIM2-AS1:6
4.1 ZIM2-AS1:6
5.0 ZIM2-AS1:6
5.1 ZIM2-AS1:6
5.2 ZIM2-AS1:6