Transcript: ZKSCAN2-DT:14

Basic information

LNCipedia transcript ID: ZKSCAN2-DT:14 
HGNC Gene Symbol: ZKSCAN2-DT    
HGNC Full Gene Name: ZKSCAN2 divergent transcript
Ensembl Gene ID: ENSG00000274925
Ensembl Transcript ID: ENST00000612792
Location (hg38): chr16:25257952-25261066
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3115 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612792.1
Alternative gene names: ENSG00000274925.1; CTD-2547G23.4; AC008741.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.6301 non-coding 
CPAT coding probability 8.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZKSCAN2-DT:14 no no no no

Available literature

  1. Wen (2018), Up-regulation of CTD-2547G23.4 in hepatocellular carcinoma tissues and its prospective molecular regulatory mechanism: a novel qRT-PCR and bioinformatics analysis study., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AQP8-2:2
4.1 lnc-AQP8-2:2
5.0 lnc-AQP8-2:2
5.1 ZKSCAN2-DT:6
5.2 ZKSCAN2-DT:14