Transcript: ZKSCAN2-DT:16

Basic information

LNCipedia transcript ID: ZKSCAN2-DT:16 
LNCipedia gene ID: ZKSCAN2-DT
Location (hg38): chr16:25257979-25545603
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2952 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000026947.1|MICT00000129161.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.3672 non-coding 
CPAT coding probability 10.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZKSCAN2-DT:16 no no no no

Available literature

  1. Wen (2018), Up-regulation of CTD-2547G23.4 in hepatocellular carcinoma tissues and its prospective molecular regulatory mechanism: a novel qRT-PCR and bioinformatics analysis study., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AQP8-2:7
5.0 lnc-AQP8-2:7
5.1 ZKSCAN2-DT:8
5.2 ZKSCAN2-DT:16