Transcript: ZMIZ1-AS1:16

Basic information

LNCipedia transcript ID: ZMIZ1-AS1:16 
HGNC Gene Symbol: ZMIZ1-AS1    
HGNC Full Gene Name: ZMIZ1 antisense RNA 1
Ensembl Gene ID: ENSG00000224596
Ensembl Transcript ID: ENST00000428862
Location (hg38): chr10:78943328-78962394
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2851 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428862; TCONS_00018000; ENST00000428862.1; RP11-202P11.1-004; OTTHUMT00000048943.1; NONHSAT015088; ENST00000428862.5
Alternative gene names: ENSG00000224596; XLOC_008863; linc-POLR3A-1; RP11-202P11.1; ENSG00000224596.1; OTTHUMG00000018559.1; ENSG00000224596.3; ZMIZ1-AS1; ENSG00000224596.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.1117 non-coding 
CPAT coding probability 3.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZMIZ1-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC24-3:7
3.1 lnc-ZCCHC24-3:7
4.0 ZMIZ1-AS1:16
4.1 ZMIZ1-AS1:16
5.0 ZMIZ1-AS1:16
5.1 ZMIZ1-AS1:16
5.2 ZMIZ1-AS1:16