Transcript: ZNF346-IT1:1

Basic information

LNCipedia transcript ID: ZNF346-IT1:1 
HGNC Gene Symbol: ZNF346-IT1    
HGNC Full Gene Name: ZNF346 intronic transcript 1
Ensembl Gene ID: ENSG00000251666
Ensembl Transcript ID: ENST00000515264
Location (hg38): chr5:177051714-177052963
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 745 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515264.1; ZNF346-IT1-001; OTTHUMT00000372591.1; NONHSAT105378
Alternative gene names: ENSG00000251666.1; ZNF346-IT1; OTTHUMG00000163314.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.1745 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF346-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR4-1:1
4.0 ZNF346-IT1:1
4.1 ZNF346-IT1:1
5.0 ZNF346-IT1:1
5.1 ZNF346-IT1:1
5.2 ZNF346-IT1:1