Transcript: ZNF503-AS1:9

Basic information

LNCipedia transcript ID: ZNF503-AS1:9 
HGNC Gene Symbol: ZNF503-AS1    
HGNC Full Gene Name: ZNF503 antisense RNA 1
Ensembl Gene ID: ENSG00000226051
Ensembl Transcript ID: ENST00000416398
Location (hg38): chr10:75296390-75361678
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1860 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416398.1; ZNF503-AS1-001; OTTHUMT00000048824.2
Alternative gene names: ENSG00000226051.2; ZNF503-AS1; OTTHUMG00000018524.2; ENSG00000226051.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.7458 non-coding 
CPAT coding probability 4.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF503-AS1:9 no no no no

Available literature

  1. Chen (2017), LncRNA ZNF503-AS1 promotes RPE differentiation by downregulating ZNF503 expression., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VDAC2-1:5
4.0 ZNF503-AS1:9
4.1 ZNF503-AS1:9
5.0 ZNF503-AS1:9
5.1 ZNF503-AS1:9
5.2 ZNF503-AS1:9