Transcript: ZNF561-AS1:7

Basic information

LNCipedia transcript ID: ZNF561-AS1:7 
HGNC Gene Symbol: ZNF561-AS1    
HGNC Full Gene Name: ZNF561 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000267106
Ensembl Transcript ID: ENST00000587536
Location (hg38): chr19:9621517-9634862
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1799 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000498993; ENST00000587536.5
Alternative gene names: ENSG00000245884; AC008759.1; ENSG00000267106.5; ZNF561-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.949 non-coding 
CPAT coding probability 14.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF561-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBL5-2:2
3.1 lnc-UBL5-2:2
4.0 ZNF561-AS1:7
4.1 ZNF561-AS1:7
5.0 ZNF561-AS1:7
5.1 ZNF561-AS1:7
5.2 ZNF561-AS1:7