Transcript: ZNF674-AS1:2

Basic information

LNCipedia transcript ID: ZNF674-AS1:2 
LNCipedia gene ID: ZNF674-AS1
Location (hg38): chrX:46545493-46548236
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1906 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000421685; ENST00000421685.1; RP1-71L16.2-001; OTTHUMT00000056363.1
Alternative gene names: ENSG00000230844; RP1-71L16.2; ENSG00000230844.1; OTTHUMG00000021424.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6005 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF674-AS1:2 no no no no

Available literature

  1. Zhang (2016), Expression and Clinical Significance of the Novel Long Noncoding RNA ZNF674-AS1 in Human Hepatocellular Carcinoma., Biomed Res Int
  2. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST7-1:1
3.1 lnc-CHST7-1:1
4.0 ZNF674-AS1:2
4.1 ZNF674-AS1:2
5.0 ZNF674-AS1:2
5.1 ZNF674-AS1:2
5.2 ZNF674-AS1:2