Transcript: ZSCAN16-AS1:3

Basic information

LNCipedia transcript ID: ZSCAN16-AS1:3 
HGNC Gene Symbol: ZSCAN16-AS1    
HGNC Full Gene Name: ZSCAN16 antisense RNA 1
Ensembl Gene ID: ENSG00000269293
Ensembl Transcript ID: ENST00000600652
Location (hg38): chr6:28121795-28137293
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2163 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440300; ENST00000600652.1
Alternative gene names: ENSG00000224024; ENSG00000269293.2; ZSCAN16-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.8002 non-coding 
CPAT coding probability 66.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ZSCAN16-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZKSCAN4-1:1
3.1 lnc-ZKSCAN4-1:1
4.0 ZSCAN16-AS1:3
4.1 ZSCAN16-AS1:3
5.0 ZSCAN16-AS1:3
5.1 ZSCAN16-AS1:3
5.2 ZSCAN16-AS1:3