Transcript: lnc-AACS-1:1

Basic information

LNCipedia transcript ID: lnc-AACS-1:1 
LNCipedia gene ID: lnc-AACS-1
Ensembl Gene ID: ENSG00000256814
Ensembl Transcript ID: ENST00000543922
Location (hg38): chr12:125150058-125151394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 585 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543922; ENST00000543922.1; RP11-158L12.5-001; OTTHUMT00000400217.1; NONHSAT031713
Alternative gene names: ENSG00000256814; RP11-158L12.5; ENSG00000256814.1; OTTHUMG00000168552.1; AC122688.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.7347 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AACS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AACS-1:1
3.1 lnc-AACS-1:1
4.0 lnc-AACS-1:1
4.1 lnc-AACS-1:1
5.0 lnc-AACS-1:1
5.1 lnc-RFLNA-15:1
5.2 lnc-AACS-1:1