Transcript: lnc-AAGAB-1:25

Basic information

LNCipedia transcript ID: lnc-AAGAB-1:25 
LNCipedia gene ID: lnc-AAGAB-1
Ensembl Gene ID: ENSG00000259347
Ensembl Transcript ID: ENST00000636067
Location (hg38): chr15:67054705-67065268
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2431 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636067.1
Alternative gene names: ENSG00000259347.6; RP11-798K3.2; AC087482.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.5981 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AAGAB-1:25 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-342M21.2.1-1:20
5.0 lnc-RP11-342M21.2.1-1:20
5.1 lnc-AAGAB-1:3
5.2 lnc-AAGAB-1:25