Transcript: lnc-AARS-1:2

Basic information

LNCipedia transcript ID: lnc-AARS-1:2 
LNCipedia gene ID: lnc-AARS-1
Ensembl Gene ID: ENSG00000261777
Ensembl Transcript ID: ENST00000570278
Location (hg38): chr16:70333783-70346747
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 887 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570278.1; RP11-529K1.2-001; OTTHUMT00000435041.1; NONHSAT143423
Alternative gene names: ENSG00000261777.1; RP11-529K1.2; OTTHUMG00000177044.1; ENSG00000261777.5; AC012184.3

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.3531 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AARS-1:2 no no no no

Available literature

  1. Liu (2015), Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer., Mol Biosyst

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AARS-1:2
4.0 lnc-AARS-1:2
4.1 lnc-AARS-1:2
5.0 lnc-AARS-1:2
5.1 lnc-NOB1-22:8
5.2 lnc-AARS-1:2