Transcript: lnc-AARS-1:3

Basic information

LNCipedia transcript ID: lnc-AARS-1:3 
LNCipedia gene ID: lnc-AARS-1
Location (hg38): chr16:70315644-70346747
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1467 bp
Exons: 5
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000502022
Alternative gene names: ENSG00000245206

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.3531 non-coding 
CPAT coding probability 18.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AARS-1:3 no no no no

Available literature

  1. Liu (2015), Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer., Mol Biosyst

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AARS-1:1
3.1 lnc-AARS-1:3
4.0 lnc-AARS-1:3
4.1 lnc-AARS-1:3
5.0 lnc-AARS-1:3
5.1 lnc-NOB1-22:6
5.2 lnc-AARS-1:3