Transcript: lnc-AASDHPPT-1:1

Basic information

LNCipedia transcript ID: lnc-AASDHPPT-1:1 
LNCipedia gene ID: lnc-AASDHPPT-1
RefSeq ID: NR_120552
Location (hg38): chr11:106250019-106263228
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1755 bp
Exons: 6
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00019108; NR_120552; NR_120552.1
Alternative gene names: XLOC_009269; linc-ELMOD1; LOC101928535


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.7234 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AASDHPPT-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AASDHPPT-1:1
3.1 lnc-AASDHPPT-1:1
4.0 lnc-AASDHPPT-1:1
4.1 lnc-AASDHPPT-1:1
5.0 lnc-AASDHPPT-1:1
5.1 lnc-DYNC2H1-31:2
5.2 lnc-AASDHPPT-1:1