Transcript: lnc-AATK-10:1

Basic information

LNCipedia transcript ID: lnc-AATK-10:1 
LNCipedia gene ID: lnc-AATK-10
Ensembl Gene ID: ENSG00000262833
Ensembl Transcript ID: ENST00000570335
RefSeq ID: NR_110852
Location (hg38): chr17:80801640-80805632
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3204 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000570335.1; RP11-28G8.1-001; OTTHUMT00000438132.1; NONHSAT056411; NR_110852; NR_110852.1
Alternative gene names: ENSG00000262833.1; RP11-28G8.1; OTTHUMG00000177623.1; AC016245.1; LOC101928855


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6067 non-coding 
CPAT coding probability 16.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AATK-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC127496.3-8:1
4.0 lnc-AC127496.3-8:1
4.1 lnc-AC127496.3-8:1
5.0 lnc-AC127496.3-8:1
5.1 lnc-SGSH-21:1
5.2 lnc-AATK-10:1