Transcript: lnc-AATK-3:1

Basic information

LNCipedia transcript ID: lnc-AATK-3:1 
LNCipedia gene ID: lnc-AATK-3
Ensembl Gene ID: ENSG00000262098
Ensembl Transcript ID: ENST00000576859
Location (hg38): chr17:81023545-81025503
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 368 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576859.1; CTD-2561B21.10-001; OTTHUMT00000438543.1; NONHSAT056422
Alternative gene names: ENSG00000262098.1; CTD-2561B21.10; OTTHUMG00000177696.1; AC127496.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AATK-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC127496.3-2:1
4.0 lnc-AC127496.3-2:1
4.1 lnc-AC127496.3-2:1
5.0 lnc-AC127496.3-2:1
5.1 lnc-NPLOC4-25:1
5.2 lnc-AATK-3:1