Transcript: lnc-AATK-4:1

Basic information

LNCipedia transcript ID: lnc-AATK-4:1 
LNCipedia gene ID: lnc-AATK-4
Ensembl Gene ID: ENSG00000262873
Ensembl Transcript ID: ENST00000572036
Location (hg38): chr17:81017969-81020011
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 869 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572036.1; CTD-2561B21.11-001; OTTHUMT00000438542.1; NONHSAT056420
Alternative gene names: ENSG00000262873.1; CTD-2561B21.11; OTTHUMG00000177695.1; AC127496.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.0951 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AATK-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC127496.3-3:1
4.0 lnc-AC127496.3-3:1
4.1 lnc-AC127496.3-3:1
5.0 lnc-AC127496.3-3:1
5.1 lnc-NPLOC4-26:1
5.2 lnc-AATK-4:1