Transcript: lnc-AATK-5:3

Basic information

LNCipedia transcript ID: lnc-AATK-5:3 
LNCipedia gene ID: lnc-AATK-5
Ensembl Gene ID: ENSG00000263218
Ensembl Transcript ID: ENST00000577061
Location (hg38): chr17:80999518-81000127
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 285 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT056418; ENST00000577061.2
Alternative gene names: ENSG00000263218.2; CTD-2561B21.7; AC127496.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.573 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AATK-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC127496.3-4:3
4.0 lnc-AC127496.3-4:3
4.1 lnc-AC127496.3-4:3
5.0 lnc-AC127496.3-4:3
5.1 lnc-NPLOC4-27:3
5.2 lnc-AATK-5:3