Transcript: lnc-AATK-6:1

Basic information

LNCipedia transcript ID: lnc-AATK-6:1 
LNCipedia gene ID: lnc-AATK-6
Ensembl Gene ID: ENSG00000261924
Ensembl Transcript ID: ENST00000576234
Location (hg38): chr17:80966239-80971213
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3133 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545206; ENST00000576234.1; CTD-2561B21.5-001; OTTHUMT00000438212.1; NONHSAT056414
Alternative gene names: ENSG00000255691; AC127496.4; ENSG00000261924.1; CTD-2561B21.5; OTTHUMG00000177644.1; AC127496.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.6481 non-coding 
CPAT coding probability 17.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AATK-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC127496.3-1:1
3.1 lnc-AC127496.3-5:1
4.0 lnc-AC127496.3-5:1
4.1 lnc-AC127496.3-5:1
5.0 lnc-AC127496.3-5:1
5.1 lnc-NPLOC4-29:1
5.2 lnc-AATK-6:1