Transcript: lnc-AATK-6:2

Basic information

LNCipedia transcript ID: lnc-AATK-6:2 
LNCipedia gene ID: lnc-AATK-6
Ensembl Gene ID: ENSG00000261924
Ensembl Transcript ID: ENST00000573602
Location (hg38): chr17:80968220-80971078
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2091 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573602.1; CTD-2561B21.5-002; OTTHUMT00000438213.1; NONHSAT056415
Alternative gene names: ENSG00000261924.1; CTD-2561B21.5; OTTHUMG00000177644.1; AC127496.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.1472 non-coding 
CPAT coding probability 9.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AATK-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC127496.3-5:2
4.0 lnc-AC127496.3-5:2
4.1 lnc-AC127496.3-5:2
5.0 lnc-AC127496.3-5:2
5.1 lnc-NPLOC4-29:2
5.2 lnc-AATK-6:2